Consensus_vio (version of iteration-optimization)
Enter the name of
sequence file
:
General Options
Desired
Pattern Width
(-L):
Alphabet Options
Override observed frequencies with
prior probabilities
(-d)?
Sequence Alphabet
and Normalization Information (-A):
Autoset
(-A) option above :
Choose an alphabet
DNA
Protein
Alphabet is
Case Sensitive
(-CS)?
Complement Handling Options
Complement
option (-c
n
):
0 - ignore the complement
1 - include both strands as separate sequences
2 - include both strands as a single sequence
3 - assume pattern is symmetrical
Output Options
Number of top matrices to print from each cycle (-
pt
):
Number of matrices to print from the final cycle (-
pf
):
Result Options
Display on screen
Email( Text Format Only)
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